HL_6ZMW_027

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6ZMW|1|A|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2512

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZMW|1|A|A|1295
6ZMW|1|A|U|1296
6ZMW|1|A|U|1297
6ZMW|1|A|G|1298
6ZMW|1|A|A|1299
6ZMW|1|A|U|1300
6ZMW|1|A|A|1301
6ZMW|1|A|G|1302
6ZMW|1|A|C|1303
6ZMW|1|A|U|1304

Current chains

Chain A

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S15

Chain i

40S ribosomal protein S29

Chain k

Ubiquitin-40S ribosomal protein S27a