HL_6ZMW_029

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6ZMW|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_029 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1033

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZMW|1|A|G|1366
6ZMW|1|A|U|1367
6ZMW|1|A|U|1368
6ZMW|1|A|A|1369
6ZMW|1|A|A|1370
6ZMW|1|A|U|1371
6ZMW|1|A|U|1372
6ZMW|1|A|C|1373

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17