HL_6ZN5_007
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZN5_007 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1421
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6ZN5|1|2|U|416
6ZN5|1|2|C|417
6ZN5|1|2|A|418
6ZN5|1|2|G|419
6ZN5|1|2|G|420
6ZN5|1|2|G|421
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9
- Chain L
- 40S ribosomal protein S11
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
Coloring options: