HL_6ZN5_017

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_017 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1797

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZN5|1|2|A|957
6ZN5|1|2|G|958
6ZN5|1|2|G|959
6ZN5|1|2|U|960
6ZN5|1|2|G|961
6ZN5|1|2|A|962
6ZN5|1|2|A|963
6ZN5|1|2|A|964
6ZN5|1|2|U|965
6ZN5|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain c

40S ribosomal protein S26