HL_6ZN5_019

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6ZN5|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_019 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2293

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZN5|1|2|G|1054
6ZN5|1|2|A|1055
6ZN5|1|2|U|1056
6ZN5|1|2|C|1057
6ZN5|1|2|A|1058
6ZN5|1|2|G|1059
6ZN5|1|2|A|1060
6ZN5|1|2|U|1061
6ZN5|1|2|A|1062
6ZN5|1|2|C|1063
6ZN5|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain c

40S ribosomal protein S26