HL_6ZN5_020

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

6ZN5|1|2|U|1115, 6ZN5|1|2|C|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_020 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.285

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZN5|1|2|U|1114
6ZN5|1|2|U|1115
6ZN5|1|2|C|1116
6ZN5|1|2|C|1117
6ZN5|1|2|C|1118
6ZN5|1|2|A|1119

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27