HL_6ZN5_033
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZN5_033 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3727
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6ZN5|1|2|U|885
6ZN5|1|2|A|886
6ZN5|1|2|U|887
6ZN5|1|2|U|888
6ZN5|1|2|U|889
6ZN5|1|2|U|890
6ZN5|1|2|G|891
6ZN5|1|2|U|892
6ZN5|1|2|U|893
6ZN5|1|2|G|894
6ZN5|1|2|G|895
6ZN5|1|2|U|896
6ZN5|1|2|U|897
6ZN5|1|2|U|898
6ZN5|1|2|U|899
6ZN5|1|2|C|900
6ZN5|1|2|G|901
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S11
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