HL_6ZOK_005

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6ZOK|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOK_005 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.2118

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZOK|1|2|G|288
6ZOK|1|2|G|289
6ZOK|1|2|U|290
6ZOK|1|2|G|291
6ZOK|1|2|A|292
6ZOK|1|2|C|293
6ZOK|1|2|U|294
6ZOK|1|2|C|295

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain L

40S ribosomal protein S11