HL_6ZOK_028

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOK_028 not in the Motif Atlas

Homologous match to HL_8CRE_209

Geometric discrepancy: 0.4967

The information below is about HL_8CRE_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99324.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ZOK|1|2|U|885
6ZOK|1|2|A|886
6ZOK|1|2|U|887
6ZOK|1|2|U|888
6ZOK|1|2|U|889
6ZOK|1|2|U|890
6ZOK|1|2|G|891
6ZOK|1|2|U|892
6ZOK|1|2|U|893
6ZOK|1|2|G|894
6ZOK|1|2|G|895
6ZOK|1|2|U|896
6ZOK|1|2|U|897
6ZOK|1|2|U|898
6ZOK|1|2|U|899
6ZOK|1|2|C|900
6ZOK|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11