HL_6ZON_004

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZON_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1834

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZON|1|2|C|195
6ZON|1|2|C|196
6ZON|1|2|U|197
6ZON|1|2|U|198
6ZON|1|2|C|199
6ZON|1|2|G|200
6ZON|1|2|C|201
6ZON|1|2|G|202
6ZON|1|2|G|203
6ZON|1|2|G|204

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S8