HL_6ZON_020

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZON_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1525

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZON|1|2|A|957
6ZON|1|2|G|958
6ZON|1|2|G|959
6ZON|1|2|U|960
6ZON|1|2|G|961
6ZON|1|2|A|962
6ZON|1|2|A|963
6ZON|1|2|A|964
6ZON|1|2|U|965
6ZON|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S14