HL_6ZON_026

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6ZON|1|2|U|1248, 6ZON|1|2|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZON_026 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.431

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZON|1|2|G|1245
6ZON|1|2|A|1246
6ZON|1|2|C|1247
6ZON|1|2|U|1248
6ZON|1|2|C|1249
6ZON|1|2|A|1250
6ZON|1|2|A|1251
6ZON|1|2|C|1252
6ZON|1|2|A|1253
6ZON|1|2|C|1254

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain h

40S ribosomal protein S20

Chain l

40S ribosomal protein S29