HL_6ZON_031

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZON_031 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.5792

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

6ZON|1|2|C|1460
6ZON|1|2|G|1461
6ZON|1|2|U|1462
6ZON|1|2|U|1463
6ZON|1|2|C|1464
6ZON|1|2|A|1465
6ZON|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 3 subunit D

Chain w

40S ribosomal protein S17