HL_6ZP4_029

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6ZP4|1|2|U|1300, 6ZP4|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_029 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2323

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZP4|1|2|A|1295
6ZP4|1|2|U|1296
6ZP4|1|2|U|1297
6ZP4|1|2|G|1298
6ZP4|1|2|A|1299
6ZP4|1|2|U|1300
6ZP4|1|2|A|1301
6ZP4|1|2|G|1302
6ZP4|1|2|C|1303
6ZP4|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15