HL_6ZQB_001

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_001 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3329

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZQB|1|D2|C|4
6ZQB|1|D2|G|5
6ZQB|1|D2|A|6
6ZQB|1|D2|A|7
6ZQB|1|D2|A|8
6ZQB|1|D2|G|9

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UH

U3 small nucleolar RNA-associated protein 8

Chain UI

U3 small nucleolar RNA-associated protein 9

Chain UQ

NET1-associated nuclear protein 1