HL_6ZQB_002

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_002 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3085

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

6ZQB|1|D2|C|120
6ZQB|1|D2|G|121
6ZQB|1|D2|U|122
6ZQB|1|D2|C|123
6ZQB|1|D2|A|124
6ZQB|1|D2|G|125

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain US

Nucleolar complex protein 4