HL_6ZQB_008

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_008 not in the Motif Atlas

Geometric match to HL_7RQB_022

Geometric discrepancy: 0.2543

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZQB|1|D2|U|514
6ZQB|1|D2|G|515
6ZQB|1|D2|U|516
6ZQB|1|D2|A|517
6ZQB|1|D2|A|518
6ZQB|1|D2|A|519
6ZQB|1|D2|A|520
6ZQB|1|D2|G|521

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain JP

Protein SOF1

Chain UT

U3 small nucleolar RNA-associated protein 20