HL_6ZQB_011
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 6ZQB|1|D3|U|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQB_011 not in the Motif Atlas
- Homologous match to HL_4V88_188
- Geometric discrepancy: 0.4742
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6ZQB|1|D3|G|154
6ZQB|1|D3|U|155
6ZQB|1|D3|A|156
6ZQB|1|D3|A|157
6ZQB|1|D3|U|158
6ZQB|1|D3|U|159
6ZQB|1|D3|C|160
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DG
- 40S ribosomal protein S6-A
- Chain JA
- RNA cytidine acetyltransferase
Coloring options: