HL_6ZQB_011

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6ZQB|1|D3|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_011 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.4742

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZQB|1|D3|G|154
6ZQB|1|D3|U|155
6ZQB|1|D3|A|156
6ZQB|1|D3|A|157
6ZQB|1|D3|U|158
6ZQB|1|D3|U|159
6ZQB|1|D3|C|160

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain JA

RNA cytidine acetyltransferase