HL_6ZQB_016

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGGGUUCG

Length

10 nucleotides

Bulged bases

6ZQB|1|D3|G|371, 6ZQB|1|D3|G|372, 6ZQB|1|D3|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_016 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3064

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZQB|1|D3|U|368
6ZQB|1|D3|A|369
6ZQB|1|D3|A|370
6ZQB|1|D3|G|371
6ZQB|1|D3|G|372
6ZQB|1|D3|G|373
6ZQB|1|D3|U|374
6ZQB|1|D3|U|375
6ZQB|1|D3|C|376
6ZQB|1|D3|G|377

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain JE

U3 small nucleolar ribonucleoprotein protein LCP5