HL_6ZQB_020

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_020 not in the Motif Atlas

Geometric match to HL_1L9A_001

Geometric discrepancy: 0.2472

The information below is about HL_1L9A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ZQB|1|D3|C|491
6ZQB|1|D3|A|492
6ZQB|1|D3|U|493
6ZQB|1|D3|U|494
6ZQB|1|D3|C|495
6ZQB|1|D3|G|496

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JM

rRNA-processing protein FCF2

Chain UC

Something about silencing protein 10

Chain UX

rRNA-processing protein FCF1