3D structure

PDB id
6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUGCC
Length
6 nucleotides
Bulged bases
6ZQB|1|D3|U|563
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZQB_022 not in the Motif Atlas
Geometric match to HL_5TBW_006
Geometric discrepancy: 0.1495
The information below is about HL_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

6ZQB|1|D3|G|561
6ZQB|1|D3|G|562
6ZQB|1|D3|U|563
6ZQB|1|D3|G|564
6ZQB|1|D3|C|565
6ZQB|1|D3|C|566

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CJ
U3 small nucleolar ribonucleoprotein protein IMP4
Chain CL
Ribosome biogenesis protein BMS1
Chain DX
40S ribosomal protein S23-A
Chain UB
Nucleolar complex protein 14
Chain UK
U3 small nucleolar RNA-associated protein 11

Coloring options:


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