HL_6ZQB_030

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_030 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3128

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZQB|1|D3|C|1501
6ZQB|1|D3|G|1502
6ZQB|1|D3|A|1503
6ZQB|1|D3|G|1504
6ZQB|1|D3|A|1505
6ZQB|1|D3|G|1506

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UZ

Ribosome biogenesis protein UTP30