HL_6ZQB_032
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUACACAC
- Length
- 8 nucleotides
- Bulged bases
- 6ZQB|1|D3|C|1632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQB_032 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3419
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZQB|1|D3|G|1629
6ZQB|1|D3|U|1630
6ZQB|1|D3|A|1631
6ZQB|1|D3|C|1632
6ZQB|1|D3|A|1633
6ZQB|1|D3|C|1634
6ZQB|1|D3|A|1635
6ZQB|1|D3|C|1636
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain UA
- Periodic tryptophan protein 2
- Chain UL
- U3 small nucleolar RNA-associated protein 12
- Chain UM
- U3 small nucleolar RNA-associated protein 13
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