HL_6ZQC_006

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

6ZQC|1|D2|A|302, 6ZQC|1|D2|U|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_006 not in the Motif Atlas

Geometric match to HL_5F9R_002

Geometric discrepancy: 0.1748

The information below is about HL_5F9R_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZQC|1|D2|U|301
6ZQC|1|D2|A|302
6ZQC|1|D2|A|303
6ZQC|1|D2|U|304
6ZQC|1|D2|A|305

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UA

Periodic tryptophan protein 2

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UU

U3 small nucleolar RNA-associated protein 21