HL_6ZQD_010
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 6ZQD|1|D3|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_010 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.0853
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6ZQD|1|D3|G|330
6ZQD|1|D3|A|331
6ZQD|1|D3|U|332
6ZQD|1|D3|A|333
6ZQD|1|D3|G|334
6ZQD|1|D3|U|335
6ZQD|1|D3|G|336
6ZQD|1|D3|G|337
6ZQD|1|D3|C|338
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
Coloring options: