HL_6ZQE_011

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_011 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.176

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6ZQE|1|D3|U|368
6ZQE|1|D3|A|369
6ZQE|1|D3|A|370
6ZQE|1|D3|G|371
6ZQE|1|D3|G|372
6ZQE|1|D3|G|373

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DL

40S ribosomal protein S11-A

Chain DW

40S ribosomal protein S22-A

Chain UX

rRNA-processing protein FCF1