HL_6ZQE_012

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6ZQE|1|D3|C|402, 6ZQE|1|D3|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_012 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1498

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZQE|1|D3|C|393
6ZQE|1|D3|C|394
6ZQE|1|D3|U|395
6ZQE|1|D3|G|396
6ZQE|1|D3|A|397
6ZQE|1|D3|G|398
6ZQE|1|D3|A|399
6ZQE|1|D3|A|400
6ZQE|1|D3|A|401
6ZQE|1|D3|C|402
6ZQE|1|D3|G|403
6ZQE|1|D3|G|404

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-A