HL_6ZQE_029

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

6ZQE|1|D3|U|1557, 6ZQE|1|D3|U|1558, 6ZQE|1|D3|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_029 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.2409

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQE|1|D3|A|1550
6ZQE|1|D3|U|1551
6ZQE|1|D3|U|1552
6ZQE|1|D3|G|1553
6ZQE|1|D3|U|1554
6ZQE|1|D3|A|1555
6ZQE|1|D3|A|1556
6ZQE|1|D3|U|1557
6ZQE|1|D3|U|1558
6ZQE|1|D3|A|1559
6ZQE|1|D3|U|1560
6ZQE|1|D3|U|1561

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DS

40S ribosomal protein S18-A

Chain UK

U3 small nucleolar RNA-associated protein 11