HL_6ZQF_002

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6ZQF|1|D3|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_002 not in the Motif Atlas

Homologous match to HL_4V88_187

Geometric discrepancy: 0.4315

The information below is about HL_4V88_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38701.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ZQF|1|D3|C|70
6ZQF|1|D3|A|71
6ZQF|1|D3|A|72
6ZQF|1|D3|U|73
6ZQF|1|D3|U|74
6ZQF|1|D3|U|75
6ZQF|1|D3|A|76
6ZQF|1|D3|U|77
6ZQF|1|D3|A|78
6ZQF|1|D3|C|79
6ZQF|1|D3|A|80
6ZQF|1|D3|G|81

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A