HL_6ZQF_010

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6ZQF|1|D3|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_010 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0586

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZQF|1|D3|C|393
6ZQF|1|D3|C|394
6ZQF|1|D3|U|395
6ZQF|1|D3|G|396
6ZQF|1|D3|A|397
6ZQF|1|D3|G|398
6ZQF|1|D3|A|399
6ZQF|1|D3|A|400
6ZQF|1|D3|A|401
6ZQF|1|D3|C|402
6ZQF|1|D3|G|403
6ZQF|1|D3|G|404

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-A