HL_6ZQF_020

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1077

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZQF|1|D3|A|900
6ZQF|1|D3|G|901
6ZQF|1|D3|G|902
6ZQF|1|D3|U|903
6ZQF|1|D3|G|904
6ZQF|1|D3|A|905
6ZQF|1|D3|A|906
6ZQF|1|D3|A|907
6ZQF|1|D3|U|908
6ZQF|1|D3|U|909

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DO

40S ribosomal protein S14-A

Chain JJ

Pre-rRNA-processing protein PNO1

Chain UM

U3 small nucleolar RNA-associated protein 13