HL_6ZQF_025

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGCAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_025 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.3033

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6ZQF|1|D3|G|1178
6ZQF|1|D3|G|1179
6ZQF|1|D3|C|1180
6ZQF|1|D3|A|1460
6ZQF|1|D3|C|1461

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1

Chain UB

Nucleolar complex protein 14