HL_6ZQF_027

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

6ZQF|1|D3|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_027 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.1021

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQF|1|D3|A|1550
6ZQF|1|D3|U|1551
6ZQF|1|D3|U|1552
6ZQF|1|D3|G|1553
6ZQF|1|D3|U|1554
6ZQF|1|D3|A|1555
6ZQF|1|D3|A|1556
6ZQF|1|D3|U|1557
6ZQF|1|D3|U|1558
6ZQF|1|D3|A|1559
6ZQF|1|D3|U|1560
6ZQF|1|D3|U|1561

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain UB

Nucleolar complex protein 14