HL_6ZQF_028
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 6ZQF|1|D3|U|1595, 6ZQF|1|D3|C|1596, 6ZQF|1|D3|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQF_028 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3226
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.2
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZQF|1|D3|G|1594
6ZQF|1|D3|U|1595
6ZQF|1|D3|C|1596
6ZQF|1|D3|A|1597
6ZQF|1|D3|U|1598
6ZQF|1|D3|C|1599
6ZQF|1|D3|A|1600
6ZQF|1|D3|G|1601
6ZQF|1|D3|C|1602
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DT
- 40S ribosomal protein S19-A
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