HL_6ZQF_034

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

6ZQF|1|D3|A|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_034 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.1545

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZQF|1|D3|U|368
6ZQF|1|D3|A|369
6ZQF|1|D3|A|370
6ZQF|1|D3|G|371
6ZQF|1|D3|G|372
6ZQF|1|D3|G|373

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DJ

40S ribosomal protein S9-A

Chain DL

40S ribosomal protein S11-A

Chain DW

40S ribosomal protein S22-A