HL_6ZQG_006

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6ZQG|1|D3|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1376

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZQG|1|D3|G|243
6ZQG|1|D3|A|244
6ZQG|1|D3|U|245
6ZQG|1|D3|G|246
6ZQG|1|D3|A|247
6ZQG|1|D3|U|248
6ZQG|1|D3|U|249
6ZQG|1|D3|C|250

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DL

40S ribosomal protein S11-A