HL_6ZQG_019

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3354

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQG|1|D3|A|829
6ZQG|1|D3|U|830
6ZQG|1|D3|U|831
6ZQG|1|D3|U|832
6ZQG|1|D3|U|833
6ZQG|1|D3|G|834
6ZQG|1|D3|U|835
6ZQG|1|D3|U|836
6ZQG|1|D3|G|837
6ZQG|1|D3|G|838
6ZQG|1|D3|U|839
6ZQG|1|D3|U|840
6ZQG|1|D3|U|841
6ZQG|1|D3|C|842
6ZQG|1|D3|U|843

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DL

40S ribosomal protein S11-A