HL_6ZSC_028

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAGCAAAA

Length

10 nucleotides

Bulged bases

6ZSC|1|XA|A|1957, 6ZSC|1|XA|A|1961, 6ZSC|1|XA|A|1962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSC_028 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.128

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

6ZSC|1|XA|U|1954
6ZSC|1|XA|G|1955
6ZSC|1|XA|U|1956
6ZSC|1|XA|A|1957
6ZSC|1|XA|G|1958
6ZSC|1|XA|C|1959
6ZSC|1|XA|A|1960
6ZSC|1|XA|A|1961
6ZSC|1|XA|A|1962
6ZSC|1|XA|A|1963

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial