HL_6ZTJ_050

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6ZTJ|1|BA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_050 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZTJ|1|BA|A|382
6ZTJ|1|BA|C|383
6ZTJ|1|BA|A|384
6ZTJ|1|BA|C|385
6ZTJ|1|BA|G|386
6ZTJ|1|BA|U|387
6ZTJ|1|BA|G|388
6ZTJ|1|BA|G|389
6ZTJ|1|BA|U|390
6ZTJ|1|BA|A|391
6ZTJ|1|BA|U|392

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BY

50S ribosomal protein L28