3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
6ZTM|1|BA|A|751, 6ZTM|1|BA|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZTM_059 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0834
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6ZTM|1|BA|U|744
6ZTM|1|BA|1MG|745
6ZTM|1|BA|PSU|746
6ZTM|1|BA|5MU|747
6ZTM|1|BA|G|748
6ZTM|1|BA|A|749
6ZTM|1|BA|A|750
6ZTM|1|BA|A|751
6ZTM|1|BA|A|752
6ZTM|1|BA|A|753

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L32
Chain B4
50S ribosomal protein L34
Chain BD
50S ribosomal protein L3
Chain BT
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1787 s