HL_6ZU5_010

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGACAGCC

Length

9 nucleotides

Bulged bases

6ZU5|1|L50|G|279, 6ZU5|1|L50|A|280, 6ZU5|1|L50|C|281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1246

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6ZU5|1|L50|G|277
6ZU5|1|L50|C|278
6ZU5|1|L50|G|279
6ZU5|1|L50|A|280
6ZU5|1|L50|C|281
6ZU5|1|L50|A|282
6ZU5|1|L50|G|283
6ZU5|1|L50|C|284
6ZU5|1|L50|C|285

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LY0

uL24