HL_6ZU5_012

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGGCGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_012 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2686

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6ZU5|1|L50|G|343
6ZU5|1|L50|G|344
6ZU5|1|L50|U|345
6ZU5|1|L50|G|346
6ZU5|1|L50|G|347
6ZU5|1|L50|C|348
6ZU5|1|L50|G|349
6ZU5|1|L50|C|350
6ZU5|1|L50|C|351

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LII

eL36

Chain LN0

eL15

Chain LOO

eL42