HL_6ZU5_018

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6ZU5|1|L50|C|480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_018 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1019

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6ZU5|1|L50|U|472
6ZU5|1|L50|C|473
6ZU5|1|L50|U|474
6ZU5|1|L50|U|475
6ZU5|1|L50|G|476
6ZU5|1|L50|A|477
6ZU5|1|L50|A|478
6ZU5|1|L50|A|479
6ZU5|1|L50|C|480
6ZU5|1|L50|A|481

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LB0

uL3

Chain LEE

eL32