HL_6ZU5_028

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACAG

Length

5 nucleotides

Bulged bases

6ZU5|1|L50|A|1069, 6ZU5|1|L50|A|1071

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_028 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1189

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZU5|1|L50|C|1068
6ZU5|1|L50|A|1069
6ZU5|1|L50|C|1070
6ZU5|1|L50|A|1071
6ZU5|1|L50|G|1072

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LE0

eL6

Chain LEE

eL32

Chain LF0

uL30

Chain LQ0

eL18