HL_6ZU5_032

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUGGCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_032 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2216

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZU5|1|L50|G|1245
6ZU5|1|L50|C|1246
6ZU5|1|L50|U|1247
6ZU5|1|L50|G|1248
6ZU5|1|L50|G|1249
6ZU5|1|L50|C|1250
6ZU5|1|L50|C|1251
6ZU5|1|L50|C|1252

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain LG0

eL8

Chain LN0

eL15