HL_6ZU5_039

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGCGCACC

Length

9 nucleotides

Bulged bases

6ZU5|1|L50|C|1505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_039 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.2097

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZU5|1|L50|G|1500
6ZU5|1|L50|C|1501
6ZU5|1|L50|G|1502
6ZU5|1|L50|C|1503
6ZU5|1|L50|G|1504
6ZU5|1|L50|C|1505
6ZU5|1|L50|A|1506
6ZU5|1|L50|C|1507
6ZU5|1|L50|C|1508

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LR0

eL19