HL_6ZU5_040

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

6ZU5|1|L50|U|1562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_040 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0991

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6ZU5|1|L50|C|1560
6ZU5|1|L50|C|1561
6ZU5|1|L50|U|1562
6ZU5|1|L50|C|1563
6ZU5|1|L50|G|1564
6ZU5|1|L50|G|1565

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LPP

eL43

Chain S60

Small subunit ribosomal RNA; SSU rRNA