HL_6ZU5_041

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

6ZU5|1|L50|G|1584, 6ZU5|1|L50|G|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_041 not in the Motif Atlas

Geometric match to HL_6MSF_001

Geometric discrepancy: 0.116

The information below is about HL_6MSF_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZU5|1|L50|G|1583
6ZU5|1|L50|G|1584
6ZU5|1|L50|C|1585
6ZU5|1|L50|G|1586
6ZU5|1|L50|C|1587

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LR0

eL19

Chain S60

Small subunit ribosomal RNA; SSU rRNA