HL_6ZU5_045

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGCGACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_045 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2652

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZU5|1|L50|G|1688
6ZU5|1|L50|C|1689
6ZU5|1|L50|G|1690
6ZU5|1|L50|C|1691
6ZU5|1|L50|G|1692
6ZU5|1|L50|A|1693
6ZU5|1|L50|C|1694
6ZU5|1|L50|C|1695

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LII

eL36

Chain LOO

eL42