HL_6ZU5_055

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_055 not in the Motif Atlas

Geometric match to HL_4QLM_001

Geometric discrepancy: 0.2948

The information below is about HL_4QLM_001

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ZU5|1|L50|C|2120
6ZU5|1|L50|C|2121
6ZU5|1|L50|C|2122
6ZU5|1|L50|C|2123
6ZU5|1|L50|C|2124
6ZU5|1|L50|G|2125

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LBB

eL29

Chain LOO

eL42

Chain LQ0

eL18

Chain LT0

eL21